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These include chromatographic separation methods and mass spectrometric analysis to confirm peptide identity, molecular integrity, and purity specifications

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As shown in Table 3, while OHE achieved the highest accuracy (0.978 0.010), its AUC (0.795 0.089) was significantly lower than the embedding-based models, suggesting that OHEs performance is primarily driven by its accuracy in high-dimensional diagnostic features rather than its ability to effectively distinguish between classes